Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease



If you find this data or analysis useful, please cite our paper:

Morgan XC*, Kabakchiev B*, Waldron L, Tyler AD, Tickle TL, Milgrom R, Stempak JM, Gevers D, Xavier RJ, Silverberg MS*, and Huttenhower C*. "Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease." currently in review.

This data site is under construction. Please be patient.

The Bioproject webpage for this data is PRJNA273579.

Portions of this dataset overlap GSE41269 (Kabakchiev et al, Gastroenterology, 2013) and phs000659.v1.p1 (Tyler et al, Plos One, 2013 ).

Study Metadata
Study_OTU_Table
OTUs in this study
Code repository for this study

* Contributed equally

Data
Subject Transcriptome
pouchitis2015.1 GSM1591238
pouchitis2015.2 GSM1591242
pouchitis2015.3 GSM1591243
pouchitis2015.4 GSM1591244
pouchitis2015.5 GSM1591245
pouchitis2015.6 GSM1591246
pouchitis2015.7 GSM1591247
pouchitis2015.8 GSM1591248
pouchitis2015.9 GSM1591249
pouchitis2015.10 GSM1591250
pouchitis2015.11 GSM1591251
pouchitis2015.12 GSM1591253
pouchitis2015.13 GSM1591256
pouchitis2015.14 GSM1591258
pouchitis2015.15 GSM1591261
pouchitis2015.16 GSM1591264
pouchitis2015.17 GSM1591266
pouchitis2015.18 GSM1591269
pouchitis2015.19 GSM1591273
pouchitis2015.20 GSM1591278
pouchitis2015.21 GSM1591280
pouchitis2015.22 GSM1591283
pouchitis2015.23 GSM1591284
pouchitis2015.24 GSM1591285
pouchitis2015.25 GSM1591286
pouchitis2015.26 GSM1591288
pouchitis2015.27 GSM1591291
pouchitis2015.28 GSM1591292
pouchitis2015.29 GSM1591294
pouchitis2015.30 GSM1591297
pouchitis2015.31 GSM1591299
pouchitis2015.32 GSM1591300
pouchitis2015.33 GSM1591301
pouchitis2015.34 GSM1591302
pouchitis2015.35 GSM1591303
pouchitis2015.36 GSM1591306
pouchitis2015.37 GSM1591307
pouchitis2015.38 GSM1591308
pouchitis2015.39 GSM1591309
pouchitis2015.40 GSM1591310
pouchitis2015.41 GSM1591311
pouchitis2015.42 GSM1591312
pouchitis2015.43 GSM1591313
pouchitis2015.44 GSM1591314
pouchitis2015.45 GSM1591315
pouchitis2015.46 GSM1591316
pouchitis2015.47 GSM1591317
pouchitis2015.48 GSM1591318
pouchitis2015.49 GSM1591319
pouchitis2015.50 GSM1591320
pouchitis2015.51 GSM1591321
pouchitis2015.52 GSM1591322
pouchitis2015.53 GSM1591323
pouchitis2015.54 GSM1591324
pouchitis2015.55 GSM1591325
pouchitis2015.56 GSM1591326
pouchitis2015.57 GSM1591327
pouchitis2015.58 GSM1591328
pouchitis2015.59 GSM1591329
pouchitis2015.60 GSM1591330
pouchitis2015.61 GSM1591331
pouchitis2015.62 GSM1591332
pouchitis2015.63 GSM1591333
pouchitis2015.64 GSM1591334
pouchitis2015.65 GSM1591335
pouchitis2015.66 GSM1591336
pouchitis2015.67 GSM1591337
pouchitis2015.68 GSM1591338
pouchitis2015.69 GSM1591339
pouchitis2015.70 GSM1591340
pouchitis2015.71 GSM1591341
pouchitis2015.72 GSM1591342
pouchitis2015.73 GSM1591343
pouchitis2015.74 GSM1591344
pouchitis2015.75 GSM1591345
pouchitis2015.76 GSM1591346
pouchitis2015.77 GSM1591347
pouchitis2015.78 GSM1591348
pouchitis2015.79 GSM1591349
pouchitis2015.80 GSM1591350
pouchitis2015.81 GSM1591351
pouchitis2015.82 GSM1591352
pouchitis2015.83 GSM1591353
pouchitis2015.84 GSM1591354
pouchitis2015.85 GSM1591355
pouchitis2015.86 GSM1591356
pouchitis2015.87 GSM1591357
pouchitis2015.88 GSM1591358
pouchitis2015.89 GSM1591359
pouchitis2015.90 GSM1591360
pouchitis2015.91 GSM1591361
pouchitis2015.92 GSM1591362
pouchitis2015.93 GSM1591363
pouchitis2015.94 GSM1591364
pouchitis2015.95 GSM1591365
pouchitis2015.96 GSM1591366
pouchitis2015.97 GSM1591367
pouchitis2015.98 GSM1591368
pouchitis2015.99 GSM1591369
pouchitis2015.100 GSM1591370
pouchitis2015.101 GSM1591371
pouchitis2015.102 GSM1591372
pouchitis2015.103 GSM1591373
pouchitis2015.104 GSM1591374
pouchitis2015.105 GSM1591375
pouchitis2015.106 GSM1591376
pouchitis2015.107 GSM1591377
pouchitis2015.108 GSM1591378
pouchitis2015.109 GSM1591379
pouchitis2015.110 GSM1591380
pouchitis2015.111 GSM1591381
pouchitis2015.112 GSM1591382
pouchitis2015.113 GSM1591383
pouchitis2015.114 GSM1591384
pouchitis2015.115 GSM1591385
pouchitis2015.116 GSM1591386
pouchitis2015.117 GSM1591387
pouchitis2015.118 GSM1591388
pouchitis2015.119 GSM1591389
pouchitis2015.120 GSM1591390
pouchitis2015.121 GSM1591391
pouchitis2015.122 GSM1591392
pouchitis2015.123 GSM1591393
pouchitis2015.124 GSM1591394
pouchitis2015.125 GSM1591395
pouchitis2015.126 GSM1591396
pouchitis2015.127 GSM1591397
pouchitis2015.128 GSM1591398
pouchitis2015.129 GSM1591400
pouchitis2015.130 GSM1591401
pouchitis2015.131 GSM1591403
pouchitis2015.132 GSM1591405
pouchitis2015.133 GSM1591406
pouchitis2015.134 GSM1591407
pouchitis2015.135 GSM1591408
pouchitis2015.136 GSM1591409
pouchitis2015.137 GSM1591411
pouchitis2015.138 GSM1591412
pouchitis2015.139 GSM1591413
pouchitis2015.140 GSM1591414
pouchitis2015.141 GSM1591416
pouchitis2015.142 GSM1591417
pouchitis2015.143 GSM1591418
pouchitis2015.144 GSM1591419
pouchitis2015.145 GSM1591420
pouchitis2015.146 GSM1591421
pouchitis2015.147 GSM1591422
pouchitis2015.148 GSM1591423
pouchitis2015.149 GSM1591424
pouchitis2015.150 GSM1591425
pouchitis2015.151 GSM1591426
pouchitis2015.152 GSM1591427
pouchitis2015.153 GSM1591428
pouchitis2015.154 GSM1591429
pouchitis2015.155 GSM1591430
pouchitis2015.156 GSM1591431
pouchitis2015.157 GSM1591432
pouchitis2015.158 GSM1591433
pouchitis2015.159 GSM1591436
pouchitis2015.160 GSM1591441
pouchitis2015.161 GSM1591444
pouchitis2015.162 GSM1591445
pouchitis2015.163 GSM1591447
pouchitis2015.164 GSM1591449
pouchitis2015.165 GSM1591450
pouchitis2015.166 GSM1591451
pouchitis2015.167 GSM1591452
pouchitis2015.168 GSM1591453
pouchitis2015.169 GSM1591454
pouchitis2015.170 GSM1591455
pouchitis2015.171 GSM1591456
pouchitis2015.172 GSM1591457
pouchitis2015.173 GSM1591458
pouchitis2015.174 GSM1591459
pouchitis2015.175 GSM1591460
pouchitis2015.176 GSM1591461
pouchitis2015.177 GSM1591462
pouchitis2015.178 GSM1591463
pouchitis2015.179 GSM1591464
pouchitis2015.180 GSM1591465
pouchitis2015.181 GSM1591467
pouchitis2015.182 GSM1591468
pouchitis2015.183 GSM1591469
pouchitis2015.184 GSM1591474
pouchitis2015.185 GSM1591477
pouchitis2015.186 GSM1591478
pouchitis2015.187 GSM1591480
pouchitis2015.188 GSM1591481
pouchitis2015.189 GSM1591482
pouchitis2015.190 GSM1591483
pouchitis2015.191 GSM1591489
pouchitis2015.192 GSM1591490
pouchitis2015.193 GSM1591491
pouchitis2015.194 GSM1591493
pouchitis2015.195 GSM1591494
pouchitis2015.196 GSM1591499
pouchitis2015.197 GSM1591500
pouchitis2015.198 GSM1591503
pouchitis2015.199 GSM1591505
pouchitis2015.200 GSM1591233
pouchitis2015.201 GSM1591234
pouchitis2015.202 GSM1591235
pouchitis2015.203 GSM1591236
pouchitis2015.204 GSM1591237
pouchitis2015.205 GSM1591239
pouchitis2015.206 GSM1591240
pouchitis2015.207 GSM1591241
pouchitis2015.208 GSM1591252
pouchitis2015.209 GSM1591254
pouchitis2015.210 GSM1591255
pouchitis2015.211 GSM1591257
pouchitis2015.212 GSM1591259
pouchitis2015.213 GSM1591260
pouchitis2015.214 GSM1591262
pouchitis2015.215 GSM1591263
pouchitis2015.216 GSM1591265
pouchitis2015.217 GSM1591267
pouchitis2015.218 GSM1591268
pouchitis2015.219 GSM1591270
pouchitis2015.220 GSM1591271
pouchitis2015.221 GSM1591272
pouchitis2015.222 GSM1591274
pouchitis2015.223 GSM1591275
pouchitis2015.224 GSM1591276
pouchitis2015.225 GSM1591277
pouchitis2015.226 GSM1591279
pouchitis2015.227 GSM1591281
pouchitis2015.228 GSM1591282
pouchitis2015.229 GSM1591287
pouchitis2015.230 GSM1591289
pouchitis2015.231 GSM1591290
pouchitis2015.232 GSM1591293
pouchitis2015.233 GSM1591295
pouchitis2015.234 GSM1591296
pouchitis2015.235 GSM1591298
pouchitis2015.236 GSM1591304
pouchitis2015.237 GSM1591305
pouchitis2015.238 GSM1591399
pouchitis2015.239 GSM1591402
pouchitis2015.240 GSM1591404
pouchitis2015.241 GSM1591410
pouchitis2015.242 GSM1591415
pouchitis2015.243 GSM1591434
pouchitis2015.244 GSM1591435
pouchitis2015.245 GSM1591437
pouchitis2015.246 GSM1591438
pouchitis2015.247 GSM1591439
pouchitis2015.248 GSM1591440
pouchitis2015.249 GSM1591442
pouchitis2015.250 GSM1591443
pouchitis2015.251 GSM1591446
pouchitis2015.252 GSM1591448
pouchitis2015.253 GSM1591466
pouchitis2015.254 GSM1591470
pouchitis2015.255 GSM1591471
pouchitis2015.256 GSM1591472
pouchitis2015.257 GSM1591473
pouchitis2015.258 GSM1591475
pouchitis2015.259 GSM1591476
pouchitis2015.260 GSM1591479
pouchitis2015.261 GSM1591484
pouchitis2015.262 GSM1591485
pouchitis2015.263 GSM1591486
pouchitis2015.264 GSM1591487
pouchitis2015.265 GSM1591488
pouchitis2015.266 GSM1591492
pouchitis2015.267 GSM1591495
pouchitis2015.268 GSM1591496
pouchitis2015.269 GSM1591497
pouchitis2015.270 GSM1591498
pouchitis2015.271 GSM1591501
pouchitis2015.272 GSM1591502
pouchitis2015.273 GSM1591504