Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
If you find this data or analysis useful, please cite our paper:
Morgan XC*, Kabakchiev B*, Waldron L, Tyler AD, Tickle TL, Milgrom R, Stempak JM, Gevers D, Xavier RJ, Silverberg MS*, and Huttenhower C*. "Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease." currently in review.
This data site is under construction. Please be patient.
The Bioproject webpage for this data is PRJNA273579.
Portions of this dataset overlap GSE41269 (Kabakchiev et al, Gastroenterology, 2013) and phs000659.v1.p1 (Tyler et al, Plos One, 2013 ).
Study Metadata
Study_OTU_Table
OTUs in this study
Code repository for this study
* Contributed equally
Data | ||||||
---|---|---|---|---|---|---|
Subject | Transcriptome | |||||
pouchitis2015.1 | GSM1591238 | |||||
pouchitis2015.2 | GSM1591242 | |||||
pouchitis2015.3 | GSM1591243 | |||||
pouchitis2015.4 | GSM1591244 | |||||
pouchitis2015.5 | GSM1591245 | |||||
pouchitis2015.6 | GSM1591246 | |||||
pouchitis2015.7 | GSM1591247 | |||||
pouchitis2015.8 | GSM1591248 | |||||
pouchitis2015.9 | GSM1591249 | |||||
pouchitis2015.10 | GSM1591250 | |||||
pouchitis2015.11 | GSM1591251 | |||||
pouchitis2015.12 | GSM1591253 | |||||
pouchitis2015.13 | GSM1591256 | |||||
pouchitis2015.14 | GSM1591258 | |||||
pouchitis2015.15 | GSM1591261 | |||||
pouchitis2015.16 | GSM1591264 | |||||
pouchitis2015.17 | GSM1591266 | |||||
pouchitis2015.18 | GSM1591269 | |||||
pouchitis2015.19 | GSM1591273 | |||||
pouchitis2015.20 | GSM1591278 | |||||
pouchitis2015.21 | GSM1591280 | |||||
pouchitis2015.22 | GSM1591283 | |||||
pouchitis2015.23 | GSM1591284 | |||||
pouchitis2015.24 | GSM1591285 | |||||
pouchitis2015.25 | GSM1591286 | |||||
pouchitis2015.26 | GSM1591288 | |||||
pouchitis2015.27 | GSM1591291 | |||||
pouchitis2015.28 | GSM1591292 | |||||
pouchitis2015.29 | GSM1591294 | |||||
pouchitis2015.30 | GSM1591297 | |||||
pouchitis2015.31 | GSM1591299 | |||||
pouchitis2015.32 | GSM1591300 | |||||
pouchitis2015.33 | GSM1591301 | |||||
pouchitis2015.34 | GSM1591302 | |||||
pouchitis2015.35 | GSM1591303 | |||||
pouchitis2015.36 | GSM1591306 | |||||
pouchitis2015.37 | GSM1591307 | |||||
pouchitis2015.38 | GSM1591308 | |||||
pouchitis2015.39 | GSM1591309 | |||||
pouchitis2015.40 | GSM1591310 | |||||
pouchitis2015.41 | GSM1591311 | |||||
pouchitis2015.42 | GSM1591312 | |||||
pouchitis2015.43 | GSM1591313 | |||||
pouchitis2015.44 | GSM1591314 | |||||
pouchitis2015.45 | GSM1591315 | |||||
pouchitis2015.46 | GSM1591316 | |||||
pouchitis2015.47 | GSM1591317 | |||||
pouchitis2015.48 | GSM1591318 | |||||
pouchitis2015.49 | GSM1591319 | |||||
pouchitis2015.50 | GSM1591320 | |||||
pouchitis2015.51 | GSM1591321 | |||||
pouchitis2015.52 | GSM1591322 | |||||
pouchitis2015.53 | GSM1591323 | |||||
pouchitis2015.54 | GSM1591324 | |||||
pouchitis2015.55 | GSM1591325 | |||||
pouchitis2015.56 | GSM1591326 | |||||
pouchitis2015.57 | GSM1591327 | |||||
pouchitis2015.58 | GSM1591328 | |||||
pouchitis2015.59 | GSM1591329 | |||||
pouchitis2015.60 | GSM1591330 | |||||
pouchitis2015.61 | GSM1591331 | |||||
pouchitis2015.62 | GSM1591332 | |||||
pouchitis2015.63 | GSM1591333 | |||||
pouchitis2015.64 | GSM1591334 | |||||
pouchitis2015.65 | GSM1591335 | |||||
pouchitis2015.66 | GSM1591336 | |||||
pouchitis2015.67 | GSM1591337 | |||||
pouchitis2015.68 | GSM1591338 | |||||
pouchitis2015.69 | GSM1591339 | |||||
pouchitis2015.70 | GSM1591340 | |||||
pouchitis2015.71 | GSM1591341 | |||||
pouchitis2015.72 | GSM1591342 | |||||
pouchitis2015.73 | GSM1591343 | |||||
pouchitis2015.74 | GSM1591344 | |||||
pouchitis2015.75 | GSM1591345 | |||||
pouchitis2015.76 | GSM1591346 | |||||
pouchitis2015.77 | GSM1591347 | |||||
pouchitis2015.78 | GSM1591348 | |||||
pouchitis2015.79 | GSM1591349 | |||||
pouchitis2015.80 | GSM1591350 | |||||
pouchitis2015.81 | GSM1591351 | |||||
pouchitis2015.82 | GSM1591352 | |||||
pouchitis2015.83 | GSM1591353 | |||||
pouchitis2015.84 | GSM1591354 | |||||
pouchitis2015.85 | GSM1591355 | |||||
pouchitis2015.86 | GSM1591356 | |||||
pouchitis2015.87 | GSM1591357 | |||||
pouchitis2015.88 | GSM1591358 | |||||
pouchitis2015.89 | GSM1591359 | |||||
pouchitis2015.90 | GSM1591360 | |||||
pouchitis2015.91 | GSM1591361 | |||||
pouchitis2015.92 | GSM1591362 | |||||
pouchitis2015.93 | GSM1591363 | |||||
pouchitis2015.94 | GSM1591364 | |||||
pouchitis2015.95 | GSM1591365 | |||||
pouchitis2015.96 | GSM1591366 | |||||
pouchitis2015.97 | GSM1591367 | |||||
pouchitis2015.98 | GSM1591368 | |||||
pouchitis2015.99 | GSM1591369 | |||||
pouchitis2015.100 | GSM1591370 | |||||
pouchitis2015.101 | GSM1591371 | |||||
pouchitis2015.102 | GSM1591372 | |||||
pouchitis2015.103 | GSM1591373 | |||||
pouchitis2015.104 | GSM1591374 | |||||
pouchitis2015.105 | GSM1591375 | |||||
pouchitis2015.106 | GSM1591376 | |||||
pouchitis2015.107 | GSM1591377 | |||||
pouchitis2015.108 | GSM1591378 | |||||
pouchitis2015.109 | GSM1591379 | |||||
pouchitis2015.110 | GSM1591380 | |||||
pouchitis2015.111 | GSM1591381 | |||||
pouchitis2015.112 | GSM1591382 | |||||
pouchitis2015.113 | GSM1591383 | |||||
pouchitis2015.114 | GSM1591384 | |||||
pouchitis2015.115 | GSM1591385 | |||||
pouchitis2015.116 | GSM1591386 | |||||
pouchitis2015.117 | GSM1591387 | |||||
pouchitis2015.118 | GSM1591388 | |||||
pouchitis2015.119 | GSM1591389 | |||||
pouchitis2015.120 | GSM1591390 | |||||
pouchitis2015.121 | GSM1591391 | |||||
pouchitis2015.122 | GSM1591392 | |||||
pouchitis2015.123 | GSM1591393 | |||||
pouchitis2015.124 | GSM1591394 | |||||
pouchitis2015.125 | GSM1591395 | |||||
pouchitis2015.126 | GSM1591396 | |||||
pouchitis2015.127 | GSM1591397 | |||||
pouchitis2015.128 | GSM1591398 | |||||
pouchitis2015.129 | GSM1591400 | |||||
pouchitis2015.130 | GSM1591401 | |||||
pouchitis2015.131 | GSM1591403 | |||||
pouchitis2015.132 | GSM1591405 | |||||
pouchitis2015.133 | GSM1591406 | |||||
pouchitis2015.134 | GSM1591407 | |||||
pouchitis2015.135 | GSM1591408 | |||||
pouchitis2015.136 | GSM1591409 | |||||
pouchitis2015.137 | GSM1591411 | |||||
pouchitis2015.138 | GSM1591412 | |||||
pouchitis2015.139 | GSM1591413 | |||||
pouchitis2015.140 | GSM1591414 | |||||
pouchitis2015.141 | GSM1591416 | |||||
pouchitis2015.142 | GSM1591417 | |||||
pouchitis2015.143 | GSM1591418 | |||||
pouchitis2015.144 | GSM1591419 | |||||
pouchitis2015.145 | GSM1591420 | |||||
pouchitis2015.146 | GSM1591421 | |||||
pouchitis2015.147 | GSM1591422 | |||||
pouchitis2015.148 | GSM1591423 | |||||
pouchitis2015.149 | GSM1591424 | |||||
pouchitis2015.150 | GSM1591425 | |||||
pouchitis2015.151 | GSM1591426 | |||||
pouchitis2015.152 | GSM1591427 | |||||
pouchitis2015.153 | GSM1591428 | |||||
pouchitis2015.154 | GSM1591429 | |||||
pouchitis2015.155 | GSM1591430 | |||||
pouchitis2015.156 | GSM1591431 | |||||
pouchitis2015.157 | GSM1591432 | |||||
pouchitis2015.158 | GSM1591433 | |||||
pouchitis2015.159 | GSM1591436 | |||||
pouchitis2015.160 | GSM1591441 | |||||
pouchitis2015.161 | GSM1591444 | |||||
pouchitis2015.162 | GSM1591445 | |||||
pouchitis2015.163 | GSM1591447 | |||||
pouchitis2015.164 | GSM1591449 | |||||
pouchitis2015.165 | GSM1591450 | |||||
pouchitis2015.166 | GSM1591451 | |||||
pouchitis2015.167 | GSM1591452 | |||||
pouchitis2015.168 | GSM1591453 | |||||
pouchitis2015.169 | GSM1591454 | |||||
pouchitis2015.170 | GSM1591455 | |||||
pouchitis2015.171 | GSM1591456 | |||||
pouchitis2015.172 | GSM1591457 | |||||
pouchitis2015.173 | GSM1591458 | |||||
pouchitis2015.174 | GSM1591459 | |||||
pouchitis2015.175 | GSM1591460 | |||||
pouchitis2015.176 | GSM1591461 | |||||
pouchitis2015.177 | GSM1591462 | |||||
pouchitis2015.178 | GSM1591463 | |||||
pouchitis2015.179 | GSM1591464 | |||||
pouchitis2015.180 | GSM1591465 | |||||
pouchitis2015.181 | GSM1591467 | |||||
pouchitis2015.182 | GSM1591468 | |||||
pouchitis2015.183 | GSM1591469 | |||||
pouchitis2015.184 | GSM1591474 | |||||
pouchitis2015.185 | GSM1591477 | |||||
pouchitis2015.186 | GSM1591478 | |||||
pouchitis2015.187 | GSM1591480 | |||||
pouchitis2015.188 | GSM1591481 | |||||
pouchitis2015.189 | GSM1591482 | |||||
pouchitis2015.190 | GSM1591483 | |||||
pouchitis2015.191 | GSM1591489 | |||||
pouchitis2015.192 | GSM1591490 | |||||
pouchitis2015.193 | GSM1591491 | |||||
pouchitis2015.194 | GSM1591493 | |||||
pouchitis2015.195 | GSM1591494 | |||||
pouchitis2015.196 | GSM1591499 | |||||
pouchitis2015.197 | GSM1591500 | |||||
pouchitis2015.198 | GSM1591503 | |||||
pouchitis2015.199 | GSM1591505 | |||||
pouchitis2015.200 | GSM1591233 | |||||
pouchitis2015.201 | GSM1591234 | |||||
pouchitis2015.202 | GSM1591235 | |||||
pouchitis2015.203 | GSM1591236 | |||||
pouchitis2015.204 | GSM1591237 | |||||
pouchitis2015.205 | GSM1591239 | |||||
pouchitis2015.206 | GSM1591240 | |||||
pouchitis2015.207 | GSM1591241 | |||||
pouchitis2015.208 | GSM1591252 | |||||
pouchitis2015.209 | GSM1591254 | |||||
pouchitis2015.210 | GSM1591255 | |||||
pouchitis2015.211 | GSM1591257 | |||||
pouchitis2015.212 | GSM1591259 | |||||
pouchitis2015.213 | GSM1591260 | |||||
pouchitis2015.214 | GSM1591262 | |||||
pouchitis2015.215 | GSM1591263 | |||||
pouchitis2015.216 | GSM1591265 | |||||
pouchitis2015.217 | GSM1591267 | |||||
pouchitis2015.218 | GSM1591268 | |||||
pouchitis2015.219 | GSM1591270 | |||||
pouchitis2015.220 | GSM1591271 | |||||
pouchitis2015.221 | GSM1591272 | |||||
pouchitis2015.222 | GSM1591274 | |||||
pouchitis2015.223 | GSM1591275 | |||||
pouchitis2015.224 | GSM1591276 | |||||
pouchitis2015.225 | GSM1591277 | |||||
pouchitis2015.226 | GSM1591279 | |||||
pouchitis2015.227 | GSM1591281 | |||||
pouchitis2015.228 | GSM1591282 | |||||
pouchitis2015.229 | GSM1591287 | |||||
pouchitis2015.230 | GSM1591289 | |||||
pouchitis2015.231 | GSM1591290 | |||||
pouchitis2015.232 | GSM1591293 | |||||
pouchitis2015.233 | GSM1591295 | |||||
pouchitis2015.234 | GSM1591296 | |||||
pouchitis2015.235 | GSM1591298 | |||||
pouchitis2015.236 | GSM1591304 | |||||
pouchitis2015.237 | GSM1591305 | |||||
pouchitis2015.238 | GSM1591399 | |||||
pouchitis2015.239 | GSM1591402 | |||||
pouchitis2015.240 | GSM1591404 | |||||
pouchitis2015.241 | GSM1591410 | |||||
pouchitis2015.242 | GSM1591415 | |||||
pouchitis2015.243 | GSM1591434 | |||||
pouchitis2015.244 | GSM1591435 | |||||
pouchitis2015.245 | GSM1591437 | |||||
pouchitis2015.246 | GSM1591438 | |||||
pouchitis2015.247 | GSM1591439 | |||||
pouchitis2015.248 | GSM1591440 | |||||
pouchitis2015.249 | GSM1591442 | |||||
pouchitis2015.250 | GSM1591443 | |||||
pouchitis2015.251 | GSM1591446 | |||||
pouchitis2015.252 | GSM1591448 | |||||
pouchitis2015.253 | GSM1591466 | |||||
pouchitis2015.254 | GSM1591470 | |||||
pouchitis2015.255 | GSM1591471 | |||||
pouchitis2015.256 | GSM1591472 | |||||
pouchitis2015.257 | GSM1591473 | |||||
pouchitis2015.258 | GSM1591475 | |||||
pouchitis2015.259 | GSM1591476 | |||||
pouchitis2015.260 | GSM1591479 | |||||
pouchitis2015.261 | GSM1591484 | |||||
pouchitis2015.262 | GSM1591485 | |||||
pouchitis2015.263 | GSM1591486 | |||||
pouchitis2015.264 | GSM1591487 | |||||
pouchitis2015.265 | GSM1591488 | |||||
pouchitis2015.266 | GSM1591492 | |||||
pouchitis2015.267 | GSM1591495 | |||||
pouchitis2015.268 | GSM1591496 | |||||
pouchitis2015.269 | GSM1591497 | |||||
pouchitis2015.270 | GSM1591498 | |||||
pouchitis2015.271 | GSM1591501 | |||||
pouchitis2015.272 | GSM1591502 | |||||
pouchitis2015.273 | GSM1591504 |